NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10008420

Scaffold Ga0222719_10008420


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10008420 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8644
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021673Metagenome / Metatranscriptome218N
F049283Metagenome / Metatranscriptome147N
F072845Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000842013F021673GAGMKRVYSVTICGKNDCVSMTEAEASMLAMKYGKHIAMYDMTKRHGVKPEFLHKELRREQREWRGVSFSKGIKIGSFGGAAPVNWTYDDLIKVNLEALNG
Ga0222719_100084204F049283AGGMYSFKVGKMKDVQKVVHTAYDIWAAAVYAQRINKGYYKEDEFNAEGECVREANRTVARNALALGGKISVEDRCKGAEIRKFISSRLMVTAITRKLSDFQQSLSRAVELDEFVVPQDRMLIGIVNSQIAQYERAMKEEQLTKDYVYGTYGKIKERLDVELKPVSRFWLTDWGTFRYNAITKDGYKTSFYYRDKLEIGDAVKVRGTVTKHTNDTTTINRVKVI
Ga0222719_100084209F072845N/AMSGEKLTINDDGSVTEIEFDDYDFGGGYTYHPSPYVLPESEDIATSNIFSMSHDIDGKMRITGDDADIEINGISLKDTLHNLQERMAILEPNPALEAEFKELRDIRQKYIQLEKNLLEKKQMWDTLNKDD
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