Scaffold Ga0222719_10007662

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10007662
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9091
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003169	Metagenome / Metatranscriptome	504	Y
F018079	Metagenome / Metatranscriptome	237	N
F018084	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_1000766210	F003169	GAG	MVGVAKKKEKNLTMVGIAFSEHGGKTGRAMIKYPLYKKNNSRKNTLVYPGLTTVSFDRIITYMQYYYVMCQKGSLLHRCYVQLDPESADILHDSLEQRYDLVQVCAVPRSSVEPDIVIPPAP
Ga0222719_1000766212	F018084	N/A	MKIALYVLALLIMPGIIMGIVSSYRAGQRPHRLLYRQLQKFTHRKK
Ga0222719_1000766219	F018079	N/A	MEKRKMIYIISRKPTWFHTHCLTPTPGTPLWFDPTWVVGDCELCRMDIDNQDWWNNCSYNQSQRKFYDVIEKELKVWI