Scaffold Ga0222719_10006034

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10006034
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10356
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F006845	Metagenome / Metatranscriptome	363	Y
F008281	Metagenome	336	Y
F058166	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_1000603411	F058166	GGAG	MVDILGGMSNPNSESQQVYLAFKTAQQKFFLNGDTEIELKFLQLDPATFKSGWGRYAGEYQYQWDAKFGVAEPKPADDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILSSFWNQMDANSDSLPVVEYKGSKEIQVGMGRSSELSFQFTKFAPRFDNFVIPPFYDNDGDANADDGFKSPNDGLSDLVNKQVNDSNDLLTDEDIPF
Ga0222719_1000603412	F006845	AGG	MKSYKEQMDLNSYLLEQDFEDYCRFAYEKIQNACSFLGIYNDEDYESFKERCYTQLEADYLNSIEKTIH
Ga0222719_1000603421	F008281	AGGAG	MNLMCNTKHGAIEWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIKQEIKDEIWEDMQSDFEYQKSIYKIHKLNLKEKK
Ga0222719_1000603425	F001942	N/A	MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLLTEFGRSKYTVQVKSRRATKEKKFIFAAETSRSMSETYRNYHCDILAFVFFDGEEKRIMFKANTSSQNYFTFDNKVITESMELDSLKETLDNLSSVPVLNPII