Scaffold Ga0222719_10005601

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10005601
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10797
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022786	Metagenome / Metatranscriptome	213	Y
F042639	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_1000560111	F022786	AGCAGG	MGRWTDTTHVVGEVDMTDLTLDPEKIIALEQAGLLKGRYYIVLEPIDDEDEDEDGFSVRAYATRATKAEGEDGEIFDPTYVILQGLLGAIHEHFDDVYDMGLERVTLEEIGKIVPEEELKDDHKKRIKNMEDNVIKVEFGELQ
Ga0222719_1000560114	F042639	AGG	MKTADIKKVVELQGRILKLKDRIMKDVAKHNTMVIDELRPMLEDVQYATIYQVGDMTYKRGKIFSQLDCQDYGLSVKADGLATLRRIIVEDKDAPSDDTESGPSASLPE