NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10003559

Scaffold Ga0222719_10003559


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10003559 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13822
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009597Metagenome / Metatranscriptome315Y
F043624Metagenome / Metatranscriptome156Y
F084310Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000355910F043624AGGAMSDKTITYKVEDIFEDIEGDDKNVLMNIPPEVSERMGWEPGDILKITVEDGVITMTKKDETVEESNGKE
Ga0222719_1000355923F084310N/AMTPQQIFEYKQSWLPGYTVRLHSDVVDRGKTWCKRQCEKYEWSCTTWTAPYEHTFHFENIAAAQNFEMEMAPYSNQERL
Ga0222719_1000355926F009597GAGGMYAVMVCLDGKDDWIYVTKQTEHCWDLQPELFEDAHEAMEFAKTFQLPNKPEMVMVVDYYES
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