Scaffold Ga0222719_10002685

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10002685
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16129
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (62.07%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009443	Metagenome / Metatranscriptome	318	N
F081292	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_100026855	F009443	N/A	MLLTGGGSTALGAMLKGGFGMLFEGRRQKHELEVARESRANENFLKLQAELAKGGNNEFRDFSRRIIAFIGIGTLCVCILLCTLFPQAEFLSITNAHGEGRTELLFGIISWPASQDPITLSSGHLAYMGQTALMGILGFYFGPSPHRR
Ga0222719_100026856	F081292	GAG	VQFAIKIIVGVATAVWCWSELTNRMAAMELQVSRVSHESTLLGDLSARMMHLEKFAEQAKDDLDHLVEMQDSPITSDYQQFERLKYLEKEVDRLRFKIDW