Scaffold Ga0222712_10163627

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10163627
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1490
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010836	Metagenome / Metatranscriptome	298	Y
F011075	Metagenome / Metatranscriptome	295	Y
F024315	Metagenome	206	Y
F047046	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_101636271	F011075	N/A	YMSSFERHLGMVVSSHLNDAMIEISINPQLAGKRMKFIKALTFFNENLQSSVTDDYLNWLWNELFENQRWGAPYVKDTDYETK
Ga0222712_101636273	F010836	N/A	MATGNFHNVNASAIFAVQLEHEYDYEDLVDNLKSELNNDSDYVDFGKTDPNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYEGVNLDWNVEYSINGECTYDEPNFDVADVEWYAKLPKSKAVQYAKLADKKAEKIKNEIVDKLEALYNDYSEKYGVTAVFSNGETIYHKL
Ga0222712_101636274	F024315	N/A	MNYSELSKLSVEELRNINSLVVDLIKQKRTIQSLEKKVGLHVGMKVKVNHPKLYGRELEVTKINRTKANLRVVGGFASYNVPVSLIEY
Ga0222712_101636275	F047046	N/A	MNKIEELKSVIGKDVSENRSPTCRAKLIKVNKKTCTFEVVKSPYRAGDESRVGERYL