NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10129989

Scaffold Ga0222712_10129989


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10129989 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1724
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000868Metagenome / Metatranscriptome853Y
F001781Metagenome / Metatranscriptome635Y
F025671Metagenome / Metatranscriptome200Y
F038241Metagenome / Metatranscriptome166Y
F082666Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101299891F025671N/ADTLSYCEDDCGEFCSECNQGSWQDEEAMAKCQTHMVLLDTTEKAEV
Ga0222712_101299892F000868GAGGMSDPHGIIGHYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK
Ga0222712_101299893F038241GAGGMLGYTKEDLDQMSNAVHDAKLFYIMNSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD
Ga0222712_101299895F082666AGGMIETAEALPESIQRAVDLGISGIDIMHGELKIMMLVAEQELANAQAIEDETEEAMDSMERKYWEGQLDALVELYKLTYDISFAIGARDEA
Ga0222712_101299896F001781GGAGMKPEDKDKLNECLKILDTTDLGLSMVWLWTWSTITNILDDETYKAKVTQDQMWDNLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEDDEEEEEDATD
Ga0222712_101299897F000441AGGAGGMQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLIKDRMSEQEGTNE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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