Scaffold Ga0222712_10122465

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10122465
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1789
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F070119	Metagenome	123	N
F081267	Metagenome	114	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_101224651	F093864	N/A	FVLEAMVIITNVSFDEPDLSDEFIIEEARQHLIGYYKIDPEVLHLQDVNVFEV
Ga0222712_101224653	F081267	AGGAG	MSYEYHWVVVYDEDWGAFMVDAETTLLNLAEHPGVIYNKTTGRWEFAEEDSELEAEYQRLEEILAYQLTRLDIPKKVG
Ga0222712_101224654	F007525	AGTAGG	MPTMKTLEGVTVEYTQTIPTSKQMPEFYVWQEGAESYAQITYLDRVVDIERNGEMRFHIPETFEEGLVYKDKIIRYSDDLEAAGISDDIQLTQFIKTMGNAGFDIVDNNPWWEVFAHNEDMGEIYDTFYEAVDAALDYITEDRNWE
Ga0222712_101224656	F070119	GGAGG	MNLNSYSSYDFVIPNCLEPGDIIQWEDEIYTVKNFDLLSDGFIIYAIDEMEEEVELLIPDNTVLSLMEEQ