Scaffold Ga0222712_10110382

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10110382
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1909
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F061577	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_101103822	F061577	N/A	MPRPKTEMTKSGKTIAVRATLSEWNEFKRLGGTKWLRQLLADSIEKQKKTV
Ga0222712_101103823	F042184	AGG	MEIDIELYDLELAINTWVEWEYDPDYSPEEGVYDKFIWAVYLQVGYTRIDITDQLSAKECKSIEKKIEESIDDII
Ga0222712_101103824	F015970	AGGAG	MTSFNKAKWEAYQGLNDDDIIDAIQGSVAIPLAIKCNDWEYAFQFIKERIDNKMTRRAEFYLYSKTKTPSIDDDDELRTLRTLWLKDEYKGDKDET