Scaffold Ga0222712_10076115

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10076115
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2412
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F011392	Metagenome / Metatranscriptome	291	Y
F047046	Metagenome / Metatranscriptome	150	Y
F070108	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100761151	F047046	N/A	KNMTKIEELKLVIGNEVSENRSPTYRAKLVRVNKKTCTFEVVQSPYRCGDESRIGERYKVPISWSWNAFFF
Ga0222712_100761152	F011392	N/A	MNLSIKELNELIYSLGITASKGIMCDKELNVSLLNKLYDELTNRIAEEAIDEEVESDTYYVSNEEADEDYRVSMLQDEQRYESSVMNDYDVHLRKLKTRGYASQALLDYVDRKGAVSHKELETYYKQLTGSNSFSHILANLRIPYKNRKTQRYVAKEGRKGSDAKYIVKVANPSNWVVVN
Ga0222712_100761155	F005879	N/A	MFNEEVFWKDGFEGECRGGIFTRAVDLKKFLELVEANENGNGGEVVGLRFDDNNLEIIVKPKN
Ga0222712_100761158	F070108	N/A	MLFSLEEQLDIELILEEANAYGLRVEVEEYAQRYLSEGCTP