Scaffold Ga0222712_10073890

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10073890
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2454
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003690	Metagenome / Metatranscriptome	473	Y
F005531	Metagenome / Metatranscriptome	397	Y
F019325	Metagenome / Metatranscriptome	230	Y
F024319	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1007389011	F005531	AGAAG	MTITYTLWQGSQLLAVNQKASKPEEILAVIKELEKLGKGFTYNIREVEVNK
Ga0222712_1007389012	F024319	N/A	ERITNMTNRIWESRNDYLTPSHYVACSNGCGRVTAWTLCVMCGGNYATHALVNVR
Ga0222712_100738907	F019325	AGGTGG	MTTLNETLFSTIVHEYHNGGVKSAYGLDTYTRKELLRFLFASKGCNCINCLDKENN
Ga0222712_100738909	F003690	AGGAG	MTISGFELIVSNEYGLELDSFLGSLYLPWHTIILTALAVISYKVYKRFYK