Scaffold Ga0222712_10070024

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10070024
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2539
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1007002410	F015420	AGG	MKRLIKYFTPVGAEEKAFAIAMLTVTTVTLSILFLFTFLELIL
Ga0222712_1007002411	F071222	N/A	MDKEQIIKIILAEEASLLDQARELRDAFGYEDAATKRAYSQWVVISNLIGRINEETN
Ga0222712_100700246	F003299	N/A	MCQLKTMTMKIYKVVFKTFDYWNGPVKLVTRIIEAYDADHVKQLIQKNDDLILLIEEV
Ga0222712_100700249	F004234	N/A	MNFIDLYKRDNTYFSNWTTDYDSDVYIAGTIEPFTYNASETDDGDMSMYVLDEVELNLLKSKL