Scaffold Ga0222712_10065712

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10065712
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2641
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F047649	Metagenome / Metatranscriptome	149	N
F047662	Metagenome / Metatranscriptome	149	Y
F063620	Metagenome / Metatranscriptome	129	N
F074911	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100657121	F074911	N/A	MTDEQILQLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIYDKAYDDGCFDNY
Ga0222712_1006571210	F000919	N/A	EFRFSKYNNKYELVSWYENTDGSENCYVIAFFDKGKECYDMRTIGTRFFEDKDAWVVGKYGLEFLNAISAIQKEEDELK
Ga0222712_100657126	F063620	GGA	MTNHIIPKVAYIPLEYHMSVEDFLEVWKDMEMEDEPTQEDYDTFILDRGKSYFYDMRGEIENNIRLIEDN
Ga0222712_100657127	F047649	N/A	MRYYESRTYEHQCDFDAKNRAEKASQDYYKKWINLRKEVRNLVREQNLTITPEFSKLIGL
Ga0222712_100657129	F047662	N/A	MNYETDIIIHQYSSDGDFYYKLKVTDVMNMDYYYEGSALTLDNVMECIQLHLKQHQN