NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10048858

Scaffold Ga0222712_10048858


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10048858 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3176
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000868Metagenome / Metatranscriptome853Y
F038241Metagenome / Metatranscriptome166Y
F050377Metagenome / Metatranscriptome145Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1004885810F000868AGGTGGMSFLENENQMVIDATYSEIGEMLVEDWVNANLDEGQLFADYRFAEMSDNNYLKGRFNQFYDLKPGDQYYLEWNETE
Ga0222712_100488582F050377AGGAMTSTPTTTREYLKTQGISVGKRGRFSAAALGVISKAVQEGVVFSDKKNAK
Ga0222712_100488584F000441AGGAGGMKMSDKYINDQLSTAQKLLWGGSETENIEAHNIISKLIKDKIEQVEL
Ga0222712_100488586F000263GAGGMNNEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLKDALAQEELSEEAMDSMVRTECEGRLDTLVELYQLTYELSFAIQARIDLEFANEA
Ga0222712_100488587F063705AGAAGGMTKSSYFLEYMKLHLISLNQDWEDSKNSVPLNEDEYDPSDDYYIGATEAVEHLLSVATDIMNNNERI
Ga0222712_100488588F038241GGAGGMLGYTKTDLDEMGNAMHDAKLFYILKSDTVRVDEDPIVDGLLKAQDFLQGLWAEGYFDND
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