NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10043830

Scaffold Ga0222712_10043830


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10043830 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3398
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029419Metagenome / Metatranscriptome188Y
F039535Metagenome / Metatranscriptome163Y
F074589Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100438305F039535N/AMLGLRHTPTEANDERTRHDLSRTEQRKLETYNQVQKEDKVIGVDMRKIVALFVASFIGWAGIADAASAPRQVDRKQMVQHPFDFVPETKRTVPSWAKCPDLWNRLRDAGWLEKDVVKADQIIWRESRCIATAHNKQDPNTVQGVKGSLGLFQINLFWVQRTTYYPRGYLQTVLDRELMPTDLFDVDITIASAQALIAYDRSLGRCGWSAWLGC
Ga0222712_100438306F074589AGGAGGMTPAQIEGFIDRICGLFPTSQIGRNTVKNAWTADDFLLLQDVDDARKVVPLIMEHYEKFPSLKEVHRAFALLRKPATEQTVVVCEICDGNGWDNGKRWNYNTKELICEGFTKTVLERTYTYVVPCKCREFNKA
Ga0222712_100438308F029419N/ACQGNRDKCNLKDCPKFGTLGRPARDGNRRVKGCSDPTARGKRSRTKGLSKQRTARKRLGVAPSHKFGDGNEERWQDVLFANEVKAGKQIGAAVTAWLRIEAQVRSNEADYGSRRKPTRAILMPDDWGSEGLVMIRLSTWEELVRPAMHEYYEGG
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