Scaffold Ga0222712_10038924

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10038924
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3659
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F002387	Metagenome / Metatranscriptome	565	Y
F013184	Metagenome / Metatranscriptome	273	Y
F013414	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100389241	F013414	AGGCGG	MKTREIKVAEQLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELTTESGIYNSGLTSEGLFLANELNETLTKLIKTYKWENIKLPVDPDKVIAKLPKVAEQSYRHSWLHDKDHRDPVLVSHPFI
Ga0222712_1003892410	F002387	AGGAGG	MASFLEDVNQMVIDACYQEIAEQLLEQWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKEGDEDYFEQV
Ga0222712_100389246	F000263	GGA	MNAEDIGLPPHLQRLVNAGVTGLDIMHGELKNLMLIAEQELADAQAIEDETEEAMDSMARTEATGRLDTLVELYQLTYQLSFAIGEAYDRELKAGMK
Ga0222712_100389249	F013184	AGGAG	LNKYDFVIKLAGSVMANNEKEAHNKINAHLDDLGEVDSTRYDLGWPDVSWDMEYELC