Scaffold Ga0222712

Basic Information
Taxon OID	3300021963 Open in IMG/M
Scaffold ID	Ga0222712_10035816 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021963 Open in IMG/M

Scaffold ID

Ga0222712_10035816 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3857
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3857

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.1516	Long. (^o)	-121.6883	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.1516

Long. (^o)

-121.6883

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038245	Metagenome / Metatranscriptome	166	Y
F045760	Metagenome / Metatranscriptome	152	N
F070116	Metagenome / Metatranscriptome	123	N
F078719	Metagenome / Metatranscriptome	116	Y
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100358163	F070116	N/A	MSKFKTWDSEILLDAVKISLQIRTKIEELCIKTQLTPDDLPNSLIPTDSLYKLVCAYEASYNALVENDLLKSGNIKTNKQIH
Ga0222712_100358164	F099303	N/A	MKFLEFTYTKADGTTSKRAVIELVTPTKHIEGIDVSHLTESDFAEFCREFSALKADQHNQTMAKLAEFDLKHNYRRFIPENMSEVTSDYV
Ga0222712_100358165	F078719	AGG	MEIIELYIIFALTTGITSCYLFLVPAVALAKDKNIYNSFTENTWLSYLIYVVVTTVTAPFAVLPIFIPSFAERFKTGLEKSVMESQT
Ga0222712_100358166	F045760	AGGA	MASSASKSKQAYSTLYKSSTRWATNRKIKLTRALKQQPNNEQIKDALANIKYRRRTPAAKTVWSHSNIRLAKLFKEFTGRASVDLFSSNPKVQSAALSYRADSSKLKVIEGKVNFSLGARAHDTKGNLVWK
Ga0222712_100358167	F038245	AGGA	MKIYFGNANEDTFTDGLFEVNDNQYYYGVDHGTNPGGMDEVHIFDGCNRYLPIHVEAIPELIAALQEIQKIGDAVKYAQEMAERAESNAKAYVTEAWRGEFEVDFNHEGM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222712_10035816

Overview

Ecosystem & Geography

Associated Families

Sequences