Scaffold Ga0222712_10034801

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10034801
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3931
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F011753	Metagenome / Metatranscriptome	287	Y
F039993	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1003480110	F039993	AGGA	MRLTLAWICYWIGHAISETILRLGYGYSLYNKLMILSVDLDDNGVIWK
Ga0222712_1003480113	F002009	GGA	MKPPTIEELGKAAEDITWRVMGKGSEKSAYGEWFMVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNNGETAADHLERALVRALFAWAQVKREVPRL
Ga0222712_1003480114	F011753	N/A	EWAEDNIERTYWCEKALVGAGYAGRCDAYVKLRGIGDAIIDLKNRKVNPKYDPFYDSDCAQLWAYRIASGNPKAACVSVVLAANDPETLVIHQWSEDELHEAGIAFSAMLKVWAWSKKYNPPGMKL