Scaffold Ga0222712_10032222

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10032222
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4129
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042325	Metagenome	158	Y
F050949	Metagenome	144	N
F067472	Metagenome / Metatranscriptome	125	Y
F084236	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1003222211	F067472	GGA	MLTIENIQNIDGKEFQLSSGRKFIIGIARAYYDHYSFGVFPLMENNVASIKDGIVYKLVRTKRNRRGYEMTSAKLKQNVYVTPENLTMKNFILELHIQTGLLNAYNRK
Ga0222712_1003222212	F050949	GGA	MLTIENRGRLISDSFYDKMGMYWVVDKIIDDTNEYLILIENRKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKVKTYIPIETISDKRLLIKRMAEMIDASYDI
Ga0222712_1003222213	F084236	N/A	MLTIKNQYKLVAETIVVSKNGANEHWIVDDVAETPDTYVMVVLRKMGIFDTLVRRIRIQREKNELGMYSVQIIQNSKIIDKDQIRVRNIQTIEGMLNELKTIMELI
Ga0222712_1003222214	F042325	GGA	MLTIQNIQKIQGKKIHTPHAHWVVMSIEERKHDYIIKVRFEYGTTFGVKHPKYVNFKLLRYSEFSSTLGEWKMYNDQDNGYTILTKGYLQLKMFVGILGGQLHSFSN