Scaffold Ga0222712_10031909

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10031909
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4158
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007518	Metagenome	349	Y
F009801	Metagenome	312	Y
F022373	Metagenome	214	Y
F075854	Metagenome	118	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1003190910	F022373	GGAG	MRTKAILEFIYPEDEDKLLFAVKGPEMYKALTNIKMAVTGEFTHKAEMNVALKRVRDLTDQMLKELGE
Ga0222712_1003190911	F090062	GGAG	MLTTEQLRKKARKIYNNDMVPEHINRHNQRKWVRSVLQLGDRWLIAKPIGSLHANQSNT
Ga0222712_100319093	F009801	AGGAGG	MNECKKEYCDFIGSKAFEDDDGWSYEVWQAAQQAVFKRLTQRFVKYGDIPYSGKEVANYLVYLANVQK
Ga0222712_100319094	F075854	AGGAG	MPRPKPPMPLKGRQIRMSDVEWLMFKELGGAEWLRKHVKEKAKLPVKHYSFKQEDK
Ga0222712_100319095	F007518	AGGAG	MTDWTKEEDEAFNEVEKHSNLGKQILRDIEGQPYHFDLYVSPSQRNEVLEEVAKEFDAMTAFGDTAASFAVFVRNMKK