Scaffold Ga0222712_10030330

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10030330
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4295
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F005146	Metagenome / Metatranscriptome	410	Y
F006743	Metagenome / Metatranscriptome	365	Y
F051794	Metagenome	143	N
F052570	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100303301	F006743	AGGAG	MRTENWQSNMRGLRLVGEEESGSASSPYGPMKAGLTTSHRTQLLVLSELLSSLEREVENLHSKYCAAYVILIDVMERL
Ga0222712_1003033018	F004793	GAGG	MTLEEAKEIVGNQPTWALKNMVKALKMLPLMNTAQDEQRLSAAVMVIKSRKGK
Ga0222712_100303302	F051794	GGAGG	MKTIDKRKEKAERRAVWLRNYQRARGRALTKLAQQYPDQYKEILEQERLSDEANGKAWLDITGATDNSAGVLTDADGYDNAPRPKQTNRDEQDEGNLEGEE
Ga0222712_100303303	F005146	AGGAGG	MKLINFYEVADRKGDTAWGGASAIDAIEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITKLVLTTIVSERGRG
Ga0222712_100303309	F052570	N/A	MRKMKYKLPKGVELVIDDYDAERKDRQDSAFYTWWNTHRVATLTYQGREYYVECVGEMRIHYKGDLLRYCDRLIEAGIKNDKDLAKIEESGGEWINNSWFEIYDESAGDYTGEVYHEVKDAIETVANWIIDKEAVNV