Scaffold Ga0222712

Basic Information
Taxon OID	3300021963 Open in IMG/M
Scaffold ID	Ga0222712_10030178 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021963 Open in IMG/M

Scaffold ID

Ga0222712_10030178 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4308
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4308

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.1516	Long. (^o)	-121.6883	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.1516

Long. (^o)

-121.6883

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F012446	Metagenome / Metatranscriptome	280	N
F019614	Metagenome / Metatranscriptome	228	N
F029411	Metagenome / Metatranscriptome	188	Y
F040616	Metagenome / Metatranscriptome	161	N
F071981	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1003017811	F019614	N/A	MLEVSTWWMYSIYTMNVASIASNKIQVEYSAMPGDGREFLTFKVPNGWDDVKRLTNKVLTHNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0222712_1003017812	F012446	N/A	HQNYCRLYLVMKKLQKEFTGNYDKVGMNKFVQIRNENNVAIYQRFNTDGTPRSYEVFIIKVVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCREIGQAEERFDQLVIKAKDSAAAKEEAAKTGVRNRGRRGSGNKIKLDMTLNKGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV
Ga0222712_100301783	F029411	AGG	MNADSYVIDPQNETSDLYAPDYREVAPNEDSYLDSAYEDRCEAACMEDYQ
Ga0222712_100301784	F005293	N/A	MNVDSVPFIPTRDDLIGYISDTYKEINGFRPRPIWSELTYNQLDQWGQRLSAEVVTYRKQEVIRNRIARGLRRAAQRAWVEKKRGYFTPATFTLGNVVNF
Ga0222712_100301788	F040616	N/A	MIDPEDISYEDRVSGDADSYTGYGSGEDDLADYNQNEADDYCNE
Ga0222712_100301789	F071981	N/A	MKITIEVDTDNGSFEVDQYGEVKRILQQVGYYTYQYMLHPTYQLGRCREGHSIVDINGNTIGKFKIKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222712_10030178

Overview

Ecosystem & Geography

Associated Families

Sequences