Scaffold Ga0222712_10029546

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10029546
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4370
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002387	Metagenome / Metatranscriptome	565	Y
F009685	Metagenome / Metatranscriptome	314	Y
F063705	Metagenome / Metatranscriptome	129	Y
F082676	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100295461	F009685	AGGAGG	MKMSDEYIDQILNRAQELLWGGSETENIEAHNLISKLIQDRLEQASN
Ga0222712_1002954610	F082676	AGGA	MPNWVYNTLTIQGPKSEIDFIKDKLNQPFKVLHDSWNMKTNVMEVSESIYSAPVFAF
Ga0222712_1002954611	F001125	GGCGG	MGDRANFGFKDSKGDVLYLYGHWAGHRMLENLANAVEQARPRWTDESYATRICISQLVNEEWPSETGWGVYINQIGDNEHKVPVINWASKTFTLMEADLQTEVFSQSLDAFVSKYSSQPSMV
Ga0222712_1002954613	F001043	AGGAG	MSDYKDGFQDGYKFAREELMEKLSEIDIADIDTWILDRLSEMMEGGTL
Ga0222712_1002954615	F000980	N/A	EYTFKDGYGWPNGVMDLTCRCGTSCTLLSVEDATIPYTDTPLTKEEPMEESTVTTTPVPESYNSNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKTVHVLNGKIDAAKEIICEAYADSQDQDTLREIAEALGIELIKEVEWSASIEVSGTYSFNILENDYDMDLESEITDAIFADSHHGNIEINDQEVCNVREN
Ga0222712_100295463	F001019	AGGA	MSYEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEATR
Ga0222712_100295465	F063705	GGAGG	LTTPTKSSVFLEYMKLHMISLEQDWEKARNNEPLNDDEYDPSDDYFEGATDAVGHLLSVATDIMNDNLQGKGY
Ga0222712_100295468	F002387	GAGG	MASFLEDVNQMVIDAVYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKQGDEGYLE