Scaffold Ga0222712_10025709

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10025709
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4767
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F013082	Metagenome	274	Y
F019968	Metagenome / Metatranscriptome	226	Y
F022646	Metagenome	213	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1002570913	F022646	N/A	MEIRKANIIHSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKLGNVGKGIRDDRFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKLASISPCIKINQAKQEGAYNGKLNYQEHIRNNKKSSLQS
Ga0222712_1002570914	F006893	AGG	MENLTIKNISETTKKVLCNHKLYKDINFYEVPHNKVCLAVIRSITELSYNEIGKAYNKSWFTIYASVKDCQKNGLKSFTNKIIDLVKAEVK
Ga0222712_100257094	F013082	AGGA	MSSTKTVQQEINRLLLESKTNRYIVSNEAPYYYDLCSVEDKTITLDKFYKLFPYYNPDMNCEYWQTQHNRWKEIWNEAN
Ga0222712_100257099	F019968	AGAAGG	MRNTGVICSMSYYEMKLMTAVLSRILLDNEIRGENTKKRITTLISKLNNMLTKQC