NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10025709

Scaffold Ga0222712_10025709


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10025709 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4767
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F013082Metagenome274Y
F019968Metagenome / Metatranscriptome226Y
F022646Metagenome213N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1002570913F022646N/AMEIRKANIIHSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKLGNVGKGIRDDRFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKLASISPCIKINQAKQEGAYNGKLNYQEHIRNNKKSSLQS
Ga0222712_1002570914F006893AGGMENLTIKNISETTKKVLCNHKLYKDINFYEVPHNKVCLAVIRSITELSYNEIGKAYNKSWFTIYASVKDCQKNGLKSFTNKIIDLVKAEVK
Ga0222712_100257094F013082AGGAMSSTKTVQQEINRLLLESKTNRYIVSNEAPYYYDLCSVEDKTITLDKFYKLFPYYNPDMNCEYWQTQHNRWKEIWNEAN
Ga0222712_100257099F019968AGAAGGMRNTGVICSMSYYEMKLMTAVLSRILLDNEIRGENTKKRITTLISKLNNMLTKQC

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