Basic Information | |
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Taxon OID | 3300021963 Open in IMG/M |
Scaffold ID | Ga0222712_10025709 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4767 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.1516 | Long. (o) | -121.6883 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006893 | Metagenome | 362 | Y |
F013082 | Metagenome | 274 | Y |
F019968 | Metagenome / Metatranscriptome | 226 | Y |
F022646 | Metagenome | 213 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222712_1002570913 | F022646 | N/A | MEIRKANIIHSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKLGNVGKGIRDDRFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKLASISPCIKINQAKQEGAYNGKLNYQEHIRNNKKSSLQS |
Ga0222712_1002570914 | F006893 | AGG | MENLTIKNISETTKKVLCNHKLYKDINFYEVPHNKVCLAVIRSITELSYNEIGKAYNKSWFTIYASVKDCQKNGLKSFTNKIIDLVKAEVK |
Ga0222712_100257094 | F013082 | AGGA | MSSTKTVQQEINRLLLESKTNRYIVSNEAPYYYDLCSVEDKTITLDKFYKLFPYYNPDMNCEYWQTQHNRWKEIWNEAN |
Ga0222712_100257099 | F019968 | AGAAGG | MRNTGVICSMSYYEMKLMTAVLSRILLDNEIRGENTKKRITTLISKLNNMLTKQC |
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