Scaffold Ga0222712_10023417

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10023417
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5067
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003291	Metagenome / Metatranscriptome	495	Y
F007113	Metagenome / Metatranscriptome	357	Y
F011934	Metagenome / Metatranscriptome	285	Y
F027513	Metagenome / Metatranscriptome	194	N
F093862	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1002341714	F027513	N/A	MGKNSGVKPGEQVASNRALHNDMQLVEDTNGEYDVVVFHVDRYTLIRGEYYPIGKNFHYPKIWGRKYAATKLIEDIMADKRRSIEEAESELIKLQKCLDKVNLWSDTDQ
Ga0222712_1002341715	F011934	N/A	PTEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQRFRWYNHYNVKYGYKNNPYELAARENEKLVKRAYKKQK
Ga0222712_100234172	F007113	N/A	MKLELTPEQLKTVEIALCELFNSDRWIANRTETEIDNIAERAGNLLNIIQLHNTMNSNKPIRTIK
Ga0222712_100234173	F093862	N/A	MNIMTVKYESELQIIALTKLLSAVYDTPVRPRGRHSDRKKVLGGRWRKWSQNDIPWRMAERVTFYKVNR
Ga0222712_100234174	F003291	N/A	MNTKEINQKLVSVFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVCDALLLSNELNAVVIDSKPNPNAPMGSAAYKAYEAMYDSDVRAHS