Scaffold Ga0222712_10019856

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10019856
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5626
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020891	Metagenome	221	N
F023838	Metagenome	208	N
F042314	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100198563	F020891	AGG	MTFAQHAFAACCRKAKEVGRRLNKDEWLATMQAAYDSYPHDGLLVSDNPKPKKTLPKATDEDWLKELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMTDRPIGLVASDLRTLNRTQSKQQDEPAGWREWVRENSTNPDNADKPWSALDPAAQKYIISQLNGTPAVHPARPSPRPVLDREEVPDSYQPVARQTDAGALLVGNLLRQYR
Ga0222712_100198565	F023838	GGA	MAGRETSIDLDRLIRCLEAREGARWASPGGALQFTRATWSEFSRDPYLRASQPDKARQIARKALFLTTQRMEQDGIRPSVWLLALRWNCGYDGMKKRMLEPWSYAAHVHNLYYDDTFR
Ga0222712_100198566	F042314	GAG	MTHTQSGQELKDQGCTQVLEHTPEAWVAAFEQQAGALLKANGSFTSEEVVTMIGQPPNHLNAIGAVCRQFVKRNGLTGSYEPARSPTAHGRIITRWSMTTF