NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10018337

Scaffold Ga0222712_10018337


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10018337 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5928
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F011753Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100183371F011753N/AKGLVGAGYAGRCDAYVKLRGIGDAIIDLKNRKVNPKASSPFYEASDCPQLYAYRIASENPQAACVSIVLASNDASKIMTRTWEDDELYQSGIAFQAMLKIWCWVKGYTPPGCKL
Ga0222712_1001833712F002826AGGAMTVDTRARLKWSRDILLTAREKLVLEKNRADRGRSVDIIQIITMVDAAALIAKEILESE
Ga0222712_100183372F002009AGGAMTAPTIAEMGDEAAAVTWRVMGKGSDKSAYGDWLLKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETATDHLERALVRCLFTLAQIKKEVTRL
Ga0222712_100183375F003304GGAMRKALVTQAFGDEWKKILELTKPRMEAYCKRHQIDFISLEKPLAEPVQYSKSAIGNIMATKGYEQVTFLDADVLVAADCPDIGEDAGVFCAFDEGAYLDRKLAMGKLAGTFGAIIDPRFYVNTGVFVISSKVVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVELHFGLDRYTDGMCIHYAGQSNNLDKLAATIVADDAKLVELGR
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