Scaffold Ga0222712_10016951

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10016951
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6225
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002935	Metagenome	519	Y
F020167	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001695112	F002935	AGGA	MDRRASRTNGYIGQIVDGKKLATIANDIYRLQYSNEFSECTVDNLLLIKLEETNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKECLTDQTEDIADYIRIFGDRLDRNCSLWQSKMVLDNAVELV
Ga0222712_100169514	F001460	GGTGG	MLGYDLSDLNRMTNAVHDAKLFYLRSPSDLIDKGPLVKDLEDVVSFLQGLWAEGYFDGYQ
Ga0222712_100169515	F020167	AGGAG	MRTIEELVNEIYEDNYSHIEFDENMGGEDCDCNIHTTLNTIVKYWWNE
Ga0222712_100169519	F000311	GGA	MYFELTAPDRLSLEMAYWEAQISGLDPEFMPPLTFNIGTGSIEKVSRIRDKFNLKETYLADYEPNHPYQKE