Scaffold Ga0222712_10015028

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10015028
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6729
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000601	Metagenome	996	Y
F013885	Metagenome / Metatranscriptome	267	Y
F020539	Metagenome / Metatranscriptome	223	Y
F024771	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001502816	F024771	GAG	MNDKKYIENFNHESYENRTKNYLNISEDRFVQYCTSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKSFPDYFVYAPKEAHKQEQFFVELKNATWEQGKTLAKIKVRDIKRYIYFEQSFTNYHTRFTICFPLADKIIFKSVDQILKLLPKSQLKCFPNDNIEYFEVQLN
Ga0222712_100150284	F000601	N/A	MIVRKLNIGEIIKLFSNENGFAWGDNTVIKSLVPKASYDMTCAGEFIIDRWDSIYPQPTSQQIKEEYIRQQTIAEVIDYLKTKDFDLIKFVCDKK
Ga0222712_100150285	F013885	AGGAG	MLNYSDIKNYWSKFYADAFEDAKSYWKNYFDLVQNIYKK
Ga0222712_100150286	F020539	N/A	MARTQNEQLIAFKGHITGIKREIRILSTSMYKLEKKVENLYWSILVATGSLSLALITIFLAK