Scaffold Ga0222712_10013724

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10013724
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7109
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F020910	Metagenome / Metatranscriptome	221	Y
F022197	Metagenome / Metatranscriptome	215	Y
F040623	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001372410	F020910	AGGAG	MWSRYTFVCDPDECDALVEFTVRDDFGFPLGVVQMKCPCGRFLNYISYEEAHEPIITDVSKVTPTQVVKINTNPYN
Ga0222712_100137245	F022197	AGGA	MTLETDQIENPEMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIAKIMDDELSWDDAQWDIEENVFIPELGEWHKK
Ga0222712_100137246	F007691	GAG	VAQEVNTIDDLINEIYESNYSHLEFEENMGGDACDCHIHTTLNTIAHYAGIEVGE
Ga0222712_100137247	F040623	GAGG	MKVRISLEQTIDIDDAMSNDIGFELYGPPDMSNDDKVDYLIARFAEDIDTMVKYDEVLGNISVEYIED