Scaffold Ga0222712_10012988

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10012988
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7365
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F012770	Metagenome / Metatranscriptome	277	Y
F099184	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001298812	F099184	GAG	MVDVHLSQDEIESALNFVDAMRSDKVEHSVVDRKFDANNTSWAVNLMGHLGEKAVAKVYDVSVDDRVLTGGDEGYDLIINNKTVQVKTSATNQLIFNAKHLFSADYAILVQLIGDRTQPHIGSYFKVWGDISKQKFLDVCFEKDYGYGIRYVCKQEDLGSELNGKP
Ga0222712_100129883	F003658	N/A	MFDLYNLENPTFACICGCLMFEITVMWDVESREVGWYDLRQKCKECGSESTAPTPMDWEI
Ga0222712_100129889	F012770	GGA	LEFDPNEPPESYCHDCNIQFDNSFDLVDHTLEDDEEFDPYYLLPNGMQLLLGSLLRFMYHHAEEPEQIKLMAQSTYITLFAAEMGFDMVDELVEDMVVKSAMQNLDANIEKLLTKDTDEEGGA