NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10012631

Scaffold Ga0222712_10012631


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10012631 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7485
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004451Metagenome / Metatranscriptome437N
F008079Metagenome / Metatranscriptome339Y
F046370Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100126312F004451AGGAMRPILDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLWDKIREDMQYQNNMAVIDIYRGRITDRIKLIVFQTYFDKGYSTARAMAEYFKIPVTSAHYWIQEIKNDLKQLRDEN
Ga0222712_100126313F008079N/AMKIKDEYIGAKISHKGNRITLDANRYDYFVSIGLGYMFEEPTVSEPKVVKYKAVKGPIPEPQPVVEDTEDGTEAE
Ga0222712_100126317F046370N/AMPSTTIIAQPAQLMPAYNPIKYIIDNTNKNEPGFRYIFTIYPAAGSHIPANVVAQYRVLPVFSTGYGEQDISRLMQSLVTWKFEAGQANESWYQYDVDLGFEFIDNVGYTAALTIDGLNTNITSTTAHGFVVGDQIVITQADGGVDNPALEGLHTVISVTDSTNFTVNVLFSTISNININGNVTYADLRKTQVLNDSLITNKEVFNGAYSLGIYAQGSFASADYLGTTDPSYALTSLSNPTNAIYYSSATNAALFYKSLSQFEQYLIMCRIYSGVTYTQTWYTTVGDNSLHTTSFGGADGLYNFSVSDIVNNINQDFYVEITGDNGSVFRYYFKYDDRCPINEYNQLFYLDRMGSWQSFNFQLRTYEKGQITREMYNQHVDGQVESSKWVYSSTAMGNRTYNTNVSYSLDLNTNWMDQYNADRFQELLTSPQVFYQNPESGLYHACTVEATGFENFRQKNKKLIKQSVTIKLALNTPING

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