Scaffold Ga0222712_10012196

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10012196
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7658
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003659	Metagenome / Metatranscriptome	474	Y
F011474	Metagenome / Metatranscriptome	290	N
F016114	Metagenome / Metatranscriptome	249	Y
F070805	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001219613	F003659	N/A	MTAADVIGRYLIAKKDVPVYDAPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPSAYYALQSPDAFSLSTVPGNVLIAPNVLPSVDVFPSGGIKKYAIFGALGLLALLILK
Ga0222712_1001219617	F011474	N/A	MKEKIDHLTHFDIVVKEELASCTSAEDMLVVLARNYDLRQPLGGLTKAAFTIGLRTAVGMLRPEVNANANYKEKELKETRFPHLKIFR
Ga0222712_100121964	F070805	N/A	MYLQLAGLEPLDTALDPLAPGAKPYGYDAMYLGQGQDIILPDALYKTSPGGFVDALNKLKKLYQDFQDGKKPTPANVAARAATAAMPSGGVQRSSTIQPMNGVTFAAAIGLLSQAIPYIVSILGSISATLVNNSITNKYQQNAYNVQGLNTMDISQLNLQIQRLDMDIAATNRFNFVQLMALSQFRIVYQQRFDRISGFGLLSNLPGWVLPAALGLGAYLLLRRK
Ga0222712_100121967	F016114	GGA	MHNKYWAAAFFDSRDVETINDMAAMARRQLICVRELQRDELLRLKMKYPHLTTRD