Scaffold Ga0222712

Basic Information
Taxon OID	3300021963 Open in IMG/M
Scaffold ID	Ga0222712_10011124 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021963 Open in IMG/M

Scaffold ID

Ga0222712_10011124 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8119
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8119

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (90.48%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.1516	Long. (^o)	-121.6883	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.1516

Long. (^o)

-121.6883

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002387	Metagenome / Metatranscriptome	565	Y
F005741	Metagenome / Metatranscriptome	391	Y
F007644	Metagenome / Metatranscriptome	347	Y
F038241	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001112413	F000311	GGAGG	MYFELTAPSQVAFARAIWDAELIGLDPEQCGPLTFNIGTGSIEKVSRIRDKYSLTETYWSDKEATGY
Ga0222712_1001112414	F001043	AGGAG	MSDYKDGFEDGYKFAREELMEKLAEIDIADIDSWILDRLSEMIEGNQI
Ga0222712_1001112416	F001125	GGCGG	MGDRANFGFKDSKGDTLFLYGHWAGAEMLHHLATAVAHAEPRWNDEGYATRICISQLIGQEWESQTGWGLYVNHIADNEHKVPVIDWSNQTFTLYEEDLQTVVFSLPLEKFAEKYSRLVM
Ga0222712_1001112418	F002387	GAGG	MSDPHGIIGIYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDESQYYADKQFAEMSGDKFIYDEFNKFYNIKEGDEDYLC
Ga0222712_1001112419	F038241	GAGG	MLGYSKEDLDQMSNAVHDAKLFYIMKSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD
Ga0222712_1001112420	F007644	GGAGG	LTKSSHFLEYMKIHLISLIQDLDKLYSNEDSFKYVEGQIEATRHLLSVATDIMNSSNERY
Ga0222712_100111249	F005741	AGG	MKNRFRVEIYDANKLNDLTIYSDSGVDKDYLTELVISNIKQFSGRVNAYAYDNQKKKKVSAMFFDENMVANLKSKIQSATKINFQLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222712_10011124

Overview

Ecosystem & Geography

Associated Families

Sequences