Scaffold Ga0222712_10010044

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10010044
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8696
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F014261	Metagenome	264	Y
F021297	Metagenome / Metatranscriptome	219	Y
F088517	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100100441	F014261	N/A	MKALIALTFIIVLGWTAAVTFFGPELYRAINGPEPVKTKVVRRHR
Ga0222712_1001004415	F088517	N/A	VVDEAGLTKTHRLDDRKSEITIEGIAKTTSMPVLGAALSFTVNTLSAYPSGSASASFTGTITKIDDKGSNKGFTAVTITAIDYEGITPA
Ga0222712_100100442	F003583	N/A	MAKQKPQAKESGSGNLLMAVILLTGFAGVSAFSSAYIAGYVLDTLQSRDALVMIVTDGGLKSDSVSVEQGLSSATMALKAVRDLGWALAVGCLGVGVAVFIRSRRQNAS
Ga0222712_100100443	F001923	N/A	VSASPINPEELPPEVKDGVVAAVLGGLAMTARLLLSTTPVSPGWVIRRVLAAGITSCVAGYAIAEHIQSPGLRMGAIGAIGYCAPEALDYLLKAFKARAEKEVGEIAGKKPNGKAKAPGKGKRKR
Ga0222712_100100449	F021297	N/A	MSCPNTVTISKGNTFACTFTWTPGASGPANLLTTTLSSTFEDKQFNQYAMTVTKAGDGLSFTVTYPGSTADWAIGVGRWDIKFVFPGSTVSRSEIFRVNVCDSVTK