Scaffold Ga0222712_10009971

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10009971
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8733
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F020348	Metagenome	224	N
F020651	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100099713	F011074	N/A	MQLVGINTPGEVKLAILEDWIRTEYGGFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKLLENRAFDRLFNPLSVFTKLNSTGIKKWTKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTDNWLKNQARAVAVSLFFDLQIKNGKVSFS
Ga0222712_100099717	F020348	GGA	MEIEHRKFLDDHVGNWHTVQNGYVRNIDLDILKMYEHIYRKYMSADFILTVWCGNCIFDMIKRLYTWYEAQPNDDLVITFITDEVKKPKNKKKNG
Ga0222712_100099719	F020651	N/A	MKVAILLLAQNRHDLTQCVINHNFKNKGYDADCFLIDNGSDTHETFNYPFAGYDLSKEKRGIASGVNAGLRLTTNYDAVCLLANDILLPENWLSNWVMFSQRVSKTGIIGIHCVEALPPLEDGIHKIHTPFGDNFITRELIDAIGGYNTEYDPYGMQDSDYATRSLIAGFTNYYVPDMRSEHIGHDVGNGTEYRRMKDESFAKAQEIWDRNQDRYYNQKDIRCEYFV