Scaffold Ga0222712_10009013

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10009013
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9344
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F002038	Metagenome / Metatranscriptome	600	Y
F058813	Metagenome	134	N
F105031	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000901311	F002038	GGAGG	MSTLPKGIERIAATVPKQFALLLFLDGFPYVEFTARKSADFLTDLNAWKNKTLPSLRRSEVRFFTLAPNGEIKELHLIK
Ga0222712_1000901320	F000957	GAGG	VSIQHPDGLIALFSELYEINCRVECGDIASAKAAIASTRMKKLLTHYEEALWEDGVEPLKLEAYVAAGGWVGLTYSYRYPADGFTVTNSVTPRRV
Ga0222712_1000901321	F105031	N/A	PPLTLLSPPMPDPSHRPYNPMTIIRPNTKPTLWWLFPWSYAQTLHMAANALKALCDRQDDALNLQAHIIADQSEEIRFLRQRVDDLNDAIVRGGAITPDAGPIPEDSES
Ga0222712_100090136	F058813	AGG	MTTMAAPTLVLISGFARAGKDCLATGILEWAKRPARKTNFADCLKDAANDFMWSLNLEGDFHSEPFKVRHRDVLVTLGRFARSLNVNVFAENLANYTPIQMSADQLAPETVVCSDLRYLNEVRVCQDILWERGWKVRTVFVSTAGVGPANDEELDSICELKAEHSFDQEFVFAPNSRQQIMNEGRHLALSWNL