Scaffold Ga0222712_10008683

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10008683
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9555
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F037727	Metagenome / Metatranscriptome	167	Y
F105019	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100086831	F037727	N/A	TPTKSSKFLEYMKIHRISLIQDNENEIQDTNNPDWNFLQGQIVATEHLLSVATDIMNNSTNERYE
Ga0222712_1000868320	F105019	AGGA	MGKHLKKIEAALKIRQANHKGPGGKLPGSMNKKKTGYAKVK
Ga0222712_100086833	F001019	AGGA	LTYEPSLEILEVEYSCSPGGVDLFEVYDKSDIPLDVPIYETEDLTEAVQFCYNLGKDFTVRTLAEWNERELAYVN
Ga0222712_100086836	F000852	AGGA	MTTKREYLKSQGITVGARGRFSSAAKQILSEATQKGLTFTAETKSTKK