Scaffold Ga0222712_10008228

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10008228
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9906
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F003640	Metagenome / Metatranscriptome	475	Y
F015965	Metagenome	250	Y
F024254	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000822810	F003640	N/A	MALALVYDPRYHDFQSWASLMCEAYAGQQLAIPNQQTDWREWASGLKAIDVFVNEGIPGPYIFENWQDWATALVGAVNQPTEETAT
Ga0222712_1000822811	F024254	GAGG	MTFIEIFNYVAKVARPAHAKVTIAESMEDVFADIGLDSLDGLVMLMYFDELYGIDDATSKEWSPKSVQELHDLVMANKTKEPASMEEVVEVCK
Ga0222712_1000822813	F015965	AGG	MLVDSKKKQLSQEAILMIAAQETKSPHPASAIYAAMVKEMNMPGTSIVRDGNTLFVVHVGEGRVGFFRALNADTARNYLESSYAFIQAAYKMGFDTLVSDFEDPTIMNIFKAISRNPPQEGMGYRAERTKTGFRVTVKLGPKRAERD
Ga0222712_100082284	F000340	AGAAGG	MNWADVLKAVIPIIVASLAWLLGQVNDFSTRLTRIEGAMPALITKEGVPTDSPISAERRAIQKEQLMLHINELQVKVRLLEEREKMVKK