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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021963 Open in IMG/M |
| Scaffold ID | Ga0222712_10007752 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10301 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (68.97%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.1516 | Long. (o) | -121.6883 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004669 | Metagenome | 428 | N |
| F007752 | Metagenome | 345 | Y |
| F033432 | Metagenome | 177 | Y |
| F039133 | Metagenome | 164 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222712_1000775214 | F033432 | GAGG | MTNYRKKFLSLWSSIMAEERWHKFDSPACIQSCKGWNAWAPLCECGKNYCTFKPSGTIEDMQMVIEARPLDF |
| Ga0222712_1000775215 | F039133 | N/A | MNTTDKVIIKFKSRTPKMLYTAHYNGLLLASGRDPVDLGEFYASKYATEWILQDGDKFYTQRGVNR |
| Ga0222712_100077523 | F007752 | GGA | MQLWEIQGFESSSVRTLFVGKTANGQDCIGCAWDAYTTYIFAYEGIIDTFMYYMERYNSVGKAMAFTKLKDGMEDGFYIKPYTTGMKQQVHNQLYRMSRYEMKSAMTANIVVHQDLWNETPEFAVKCLVNDEVLSGETSYFVTCMTNRVTA |
| Ga0222712_100077526 | F004669 | GGA | MHLWKIKNFQSSSVKSLFVGRTANGQDCIACAWNSSELYVFAYEGIVDTFLWALETFKSVGQAMAYAKLRNDFEDRRYGVPYSVTMEQRTHNQLYMFQLEYLHIYEDTLKIHSNLCDDTPENAIKNLISRGDIEAENSKLVNVLRNREVCA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |