Scaffold Ga0222712_10005003

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10005003
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13601
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012211	Metagenome / Metatranscriptome	282	N
F040522	Metagenome	161	N
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000500323	F046258	GGAG	MKLLTIAIRRVLSYFEIVTLQPKLPILHKEKTPARMTLPTLLITDPKFVYQSAACTDISQTFQKAKDERLQRLLNDADGNRKQDQGTEQQVPVKKLRRVHG
Ga0222712_1000500325	F012211	N/A	MPTDEERFKYECWAIVQELDPEDIADAIGDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKITAAKMDGPFQQMFDE
Ga0222712_100050035	F040522	N/A	MANGCVAAIRKGCELYKEVKGTVAAAQKTVKDVTAIAEEVGGFFGFFKKKKPKPTATPVAPKAKKAEAEIWDEGRVVADLAANLSQFFKVQQQLADHIREEEEKSKSVYDPNQNIMESALNRELAKTQFEKLAKEIREIMVYQSPPELGNLYTRVNQMRVIIIAEQEEARLAQEKKQREVEWQRRKVISAIQDKAIYGVACLVFVLYLVLFFSLLIMDRKVRWGF