Scaffold Ga0222712_10004445

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10004445
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14659
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006016	Metagenome	383	Y
F042295	Metagenome	158	Y
F056420	Metagenome	137	Y
F091924	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000444512	F042295	N/A	MKFEEKEQGHECFANGCPMAGGISTGGRWVCAYHNQAPSEEWPRVTEALRDAEHVRVAIDEVMKIDMISWGANTGGYPPKWQEFAALFDDYPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKV
Ga0222712_1000444518	F006016	N/A	MTTATLIQTEALISTITSDIDALYVLDQQAKALAEQVKAMKEAIANKYGEGEHKGELHSVTVQLVQVSGTVDYKKLCVSYGITDDVLATFRKEGRADIRVSPAK
Ga0222712_1000444519	F056420	AGGAG	MTTLFKLEEHLMMLLVEDKICFEEGDWDRLQNIRLAIDDTRDQIESFNKKVKA
Ga0222712_1000444529	F091924	GGAG	MTEQIWEADWICENPELANKAITELQTRVQELESKLKHVTVKAANLEKQNKEFKLTIKDMDRRIMRGLRD