Scaffold Ga0222712_10004127

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10004127
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15374
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006344	Metagenome	375	Y
F010158	Metagenome	307	Y
F041651	Metagenome	159	Y
F072113	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000412719	F010158	N/A	MNRINEPEWIFPFDGMNVGDSFFIPTLRPAEMLFAVENRAKVAGVKVKAYPSSKDGRLGIRVWRV
Ga0222712_100041272	F041651	GAG	MKNIEDEWVVEWDRMSHTISEYRQEIREMRERIGWYVSRIEELENEVKQLKSTDARWVQE
Ga0222712_100041276	F072113	GGAG	MTSVHQKKVLGFWLLPGAEGVQQFGVTRKPHAFHRAMMRLCFGWQWMDKELTCDYCNLYPRLRKKTHCAECARSLEGGELYNVIKLAEKAGIVFGMNSTEITVQKLEKFLALAREIKKP
Ga0222712_100041279	F006344	AGG	VETEDDILDLIRVLPNEINDTGTTTEFKFLTVGSVLWACREEIIKLREENAKLKAKRKR