Scaffold Ga0222712_10003510

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10003510
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17019
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000351011	F004722	N/A	MSLPRTGRELVMEWLMREIRQAKTADLHRAAAFLEWARGIRKGCTKQRSSARAAQSNAWRKDVDDDVRWRV
Ga0222712_1000351015	F043896	GGAG	MNNPELADWARQNWGQVIVDHSRMDLLEKLYEWDGRSNPEHPNHHTYTGLYEKYSQR
Ga0222712_1000351016	F003805	AGG	MRPIEHTAESSFHKAATDKWLVDLFNRQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGLDRNSA
Ga0222712_1000351020	F002867	N/A	MSVVNTTDFDNGYTLDQLENERGELYYRACLNSVCRYAEDHYIAMMYLEGMGWDPKADHQ