Scaffold Ga0222712_10003057

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10003057
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18591
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (46.51%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030414	Metagenome / Metatranscriptome	185	Y
F074331	Metagenome	119	N
F090315	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000305716	F090315	GGA	MSLDKEQINLLKEREKVIIEELEFSPLRSLENELYELRDTLEKLENKEPLIYDEYDAFDKDWSKNIIKYGSE
Ga0222712_1000305724	F074331	N/A	MNKAWEFECVLENGKELKSWFYSDTEQDASNRVKNFMSAKLISIKEIDDPLEVDKRQIKADKIRSVLQKKREIEQQEYLKQKEQNDSN
Ga0222712_100030579	F030414	AGGAG	MTNIELIQIEILNQIINEIDHQDPEAARVIAVKFRDTLQEDVDKAESDIDIQLQLETESKYGK