NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10002655

Scaffold Ga0222712_10002655


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10002655 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20186
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004155Metagenome450Y
F006588Metagenome / Metatranscriptome369Y
F080053Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000265510F080053N/AMTALEAIAQKLEEKRKSDLESILSISGSQAIAKNEYGVTVVNDNNIASSLLFKELVKPKYDETELLKAIDVNVKELKPDIPTPNLNLVPKPLYDEEVIQNEDLRKQVADLNTEVSNLNTTISDLESQVQSEINNRLSIEQTNDALVNQLNTLVQTIDDFALQIQNSLQKSVEEGILRASLQSQNTGFKAQIQALIKQIDSLNSIIEGLQSQLGAVQNQQAIVQGTQAQAMAAGADVVNDVAIVKLEQKEDANASDLWARFSATGDQQWKNGKGLSITNNDKQPISVSITTKNPNNREFYKIPTKSFNIEAGGQKDVEFTLNFDAVGDLDSRKKGGWFNGKSHSAEYKDGTLKVTITRSDGTAKSKEYTAGFGKYHPDSY
Ga0222712_1000265514F004155N/AMDSKLLVGLIKEVVKNEVKQQVKEELAKLIKSGAVTLNSQRKTTSPTLREMAEVNTTPVRKQTVVPTQQRTQQPQREFSKDPMINEILNMTQPFTSEQRKEGAQAVGSVLDMIKPELRVDESEWETMDFRDVNVPAGTPTFESTGDGLQDATIKALTRDYSELVKRFK
Ga0222712_100026554F006588N/AMSKILELYKAAQASLGVDKISFEAGKNLQTPYTTNDLKKADEQVLTATKFKQGRGGEKNFAKYSDSLKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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