Scaffold Ga0222712_10002327

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10002327
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21878
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F000847	Metagenome / Metatranscriptome	861	N
F002356	Metagenome / Metatranscriptome	567	N
F006105	Metagenome / Metatranscriptome	381	Y
F007748	Metagenome / Metatranscriptome	345	N
F020667	Metagenome	222	Y
F021095	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000232711	F021095	N/A	MSITVLSGSPLVATPVFNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDMQKVVETLVSPTKPSLTQTGFVEHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELADWSLSPYFRIGSSFNSVRPLTTPTAFTVYHGGSNFLAINGTKYTTVSPNDTWLVSAQVTYKGTDYNFAVSPSLSGTTDFNIQRFACGPANLSGTITALSGAVEGDSYTVRFISNAAGQSDTTTFTFGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWIELNGTLVEAVVNANQYQFVTRRNDRLTQMQIEIAVAYDNNIL
Ga0222712_1000232712	F020667	N/A	MSVILIAYPTANFIDDLTAWNNFNTRATADGADAVEEACFDCLYLRFAGLNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPNSGHVSGTWTASGSASSGYVYGIVDAAGFSDLTQGNLVAGWWQLGPSIYVKKMVDLIFTQAGFRYSSTFFNSALFNKLVIPYAAGTMPVNLSGSNIFAQATGNTANFIKGANQTLAFPKDTPAPFYDNPGYWVASSSTFVAPALPTRWNVDVTLNVSGSISFSGSIRCNMSIRNITNSTDVSVISNITARTQNQFTVRFENITIPANITANVGFVITADTVVATQNFSVLSGTTVQWTCLENPLGIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPRLIYIEPWKDFYTSGVVDWSQKSDENAEQVLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFASDKILGRTWDLEGTRLSGSIKPLQTGYRIAQYNRITSQSPWLYWFGLEEDGFAATTPITALPFISHIDNPYAPSVDLAFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLSEFAATSTTPIANDPSALFNGPIDPDPTDPGYEPPINPELPSEG
Ga0222712_1000232715	F002356	N/A	MNLKAAIDTLRTELRKFTTQKQAFADYKLVDGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHEVEGVGVVKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKEKMASFASQMETMTDIVEKVAELPSETPKPTASAIVEQRKAATQQNFNALAQAIQNLKKSN
Ga0222712_1000232719	F006105	AGG	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVTTDFTLLKSANLSNYTERYDKFTIVVGSLETGSYKYEVYDTNSTVGAAVAVVETGLAYVQIVSLTFNTFANSIQYTVFGSSDEGVFDTTFDQSFA
Ga0222712_1000232723	F000847	AGG	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGTLNLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQIPYSHSVCEIPT
Ga0222712_1000232729	F007748	N/A	VNLIETTIIGTVSAIVGGAVAWLTRGRFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELVVLRQRIESLENTIQALEAENANLKSLQ
Ga0222712_100023277	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGLFGYFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQAQ