Scaffold Ga0222712

Basic Information
Taxon OID	3300021963 Open in IMG/M
Scaffold ID	Ga0222712_10002114 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021963 Open in IMG/M

Scaffold ID

Ga0222712_10002114 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23299
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (10.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

23299

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (10.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.1516	Long. (^o)	-121.6883	Alt. (m)	Depth (m)	10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.1516

Long. (^o)

-121.6883

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F063159	Metagenome / Metatranscriptome	130	Y
F106082	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000211416	F106082	N/A	MASIRNAKNEVVSGRGSGLTAMQEEFIERVRTEGIEQQGKIAKELNYTSYYRDKNNYGTAFYLALRSVVNKTEEKVEATKGMNLELLIKIRDEAMSVGDVKMAMEAMKMINDMQGFKAPVKVQQTKIDVKATIDLTQTTEDVSGFIDIDYEDED
Ga0222712_100021145	F063159	N/A	MGCAVDFTGLAVSYACGSIASGGLKAVYLADKSELEGLVSVTAGAATFTVTTTLKAALVTAGNDLLELGFNNKDGFSNFTDVKTVNADGSASVVPTITMEFLRMDPAKRNALEEIATPGAEIVAFVETAAGTKHLVGFDFGLYAGTVDGASGAARTDKNRYQLTLVGEENALAYTISDAEWADLV
Ga0222712_100021146	F004461	N/A	MAISVATLDWGNRTPDLFIDTMVKSAKVLDRFRLIDGVKSKVQVPIFDASLTFGNDLCVFDAQSSASIDEKEMTVETYKWAFLNCKDVLETTYRSVLLKQGQHNEETMDAQFKDWVFDYFAKLSAQKALELAATELATELSADTAVLDYDTNAALTSANILDKMEGAYQVMSANMLAAVYGDADRQLKPAFFMGTAAVQAYQIAIAGLYTTTAQGVVEGNIPAYYGMEVIHFPSLAAGSFIISAPENIVMLTDNYNDVRAIDMKYESELSSDKIWGQFKLGFSYLKGEEIVYAKNFA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222712_10002114

Overview

Ecosystem & Geography

Associated Families

Sequences