Scaffold Ga0222712_10002072

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10002072
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23587
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030983	Metagenome	183	Y
F071957	Metagenome	121	Y
F075837	Metagenome	118	Y
F083753	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000207215	F083753	N/A	MKHAEVQYISLGYKYEQAKSPASGQAAAQAIRTLMEEEAIEDRAEARHLVERGRQEARAT
Ga0222712_1000207228	F071957	AGGAG	MTKQDAELSPLARQLLGNSGAMKLFTQTEFDAALRDAKAEIMAIAIQTSKQAIAIERNACADLALQWSQEELSEAIRNRIPKQF
Ga0222712_1000207238	F075837	N/A	MQKIEAFRASDGTLWEDKDKAERHELFLQKDMIVEEFLDNDINPYKALAQRSIARTTIINWELWKNKNAE
Ga0222712_100020725	F030983	N/A	MSDEIETTIYTDDGVRVYVSEWDDGGAWFRISAQHGAMSTALTREEAQQLLAGLQAVLNKEVTA